Friday, 4th February 27th Annual Lorne Proteomics Symposium 2022

• Building new clinical solutions for personalized oncology via proteogenomics - Amanda Paulovich
• Ultra-sensitive platelet proteome profiling charts the response to thrombin dosage and reveals unexpected O-glycosylation - Mark Larance
• Single-shot LC-MS of microsampled dried whole blood to detect over 1600 proteins improves blood biomarker studies - Mark P Molloy
• To be confirmed - Yu-Ju Chen

• CSI(RO) food forensics – The case of the dubious falafel. - Michelle Colgrave
• Systems biology proteomics, metabolomics, and genomics of barley and yeast to investigate beer production - Ben L Schulz
• Multi-omic analysis to characterize metabolic adaptation of the E. coli lipidome in response to environmental stress - Gavin E Reid
• Proteomic analysis of different varieties and species of rice under various stress conditions - Paul A. Haynes
• Mining the wheat grain proteome. - Delphine Vincent

• Personalised phosphoproteomics identifies functional signalling - Elise J Needham
• Mapping cysteine exposure of proteins in situ with a bi-functional aggregation-induced emission fluorescent probe - Shouxiang Zhang
• Mass Spectrometry HistoChemistry for single cell peptidomics in Homo sapiens FFPE biobanks - Peter D Verhaert
• Gluten digestion – a more complex story than ever thought - Angela Juhasz
• Acute treatment with antioxidant N-propionylglycine improves contractile function and minimises the extent of cysteine redox post-translational modifications in the diabetic heart as identified by quantitative mass spectrometry - Molly K Talbot
• Infrared spectroscopy for rapid quality control and quantitation of lipid samples - Harley R Robinson

• Gas-phase fractionation of intact E. coli proteins by FAIMS - Matthew J Fitzhenry
• A bioinformatic approach to Characterize the microbial proteome of the human plasma of SARS-CoV-2 patients     - Aziz AA Alnakli
• Getting more out of FLAG-Tag co-immunoprecipitation mass spectrometry experiments using FAIMS - Ching-Seng Ang
• The role of modifiers of the antigen presentation pathway on spliced peptide presentation in melanoma - Ritchlynn Mr Aranha
• Identification and quantitation of alpha-amylase trypsin inhibitors in selectively bred ultra-low gluten barley lines - Utpal Bose
• Investigating the effect of different HDACi on the antigen processing and presentation pathway in DIPG - Liesl M Bramberger
• Optimising DIA Library Production   - Daniel Bucio Noble
• Detection of novel protein coding regions in Campylobacter jejuni using N-TAILS  - Joel Cain
• Mapping the Dynamic Glycome of Resting and Thrombin-Activated Platelets - The Huong Chau
• Cell-type-specific identification by different glycan features in mammalian brain cells. - Sagar Dalal
• The importance of denaturing conditions for protein and peptide quantification by tryptophan fluorescence: a proteomic case study - Chris Desire
• Multiplexing dimethyl labelled samples to enhance MS1 quantitation in single-cell proteomics - Toby A Dite
•   Multiplexed screening of thousands of natural products for protein-ligand binding in native mass spectrometry - William A Donald
• Translational Proteomics: Establishing a Mass Spectrometry Assay for Biomarkers of Oesophageal Cancer - Marisa N. Duong
• Phosphoproteomic profiling to complement genomics approaches to guide treatment selection for paediatric high-grade gliomas. - Izac Findlay
• Assessment of redox post-translational modifications (OxPTMs) reveals the mechanisms underpinning oncogenic signaling in FLT3-mutant Acute Myeloid Leukaemia   - Zacary P Germon
• Use of functional T-cell assays and immunopeptidomics to decipher the molecular mechanism underpinning penicillin allergy - Shawn Goh
• Confirmatory analysis of snake venoms by LC-HRMS for application to coronial toxicology - Joel P.A. Gummer
• Distinct proteomic responses to multiple abiotic stresses in two rice genotypes - Fatemeh Habibpourmehraban
• Crosstalk between phosphorylation and methylation on an essential protein translation factor - Joshua J Hamey
• Mass spectrometry-based proteome analysis of seed dormancy in Xanthium strumarium L. (common cocklebur) - Sara Hamzelou
• Proteome Discoverer 3.0 software with the CHIMERYS intelligent search algorithm: an AI-driven leap forward in peptide identification - Daniel Hermanson
• Benchmark of Micro-flow Chromatograph for Robust Proteomics Analysis - Enzo Huang
• Multi-site assessment of precision and reproducibility of high-throughput capillary-flow LC-MS proteome profiling with novel ultra-high-pressure LC coupled to HRAM MS - Enzo Huang
• Understanding the immunogenicity of human pluripotent stem cells via an immunopeptidomics approach - Ziyi Huang
• Performance of different trypsin sources on the preparation of formalin-fixed paraffin-embedded tissues for mass spectrometry - Erin M Humphries
• Protein Biomarkers of Obstructive Airway Diseases - Jason Ito
• High-throughput multi-capillary SDS gel electrophoresis of proteins - Peter Jackson
• Fermenting yeasts and where to find them - Edward Kerr
• Development and validation of an LC-MS/MS method for the analysis of quinolizidine alkaloid in lupin - Tawfeek Khedr
• Proteomic analysis of muscle cell organoid identifies proteins and pathways associated with aging - Jiwon Kim
• Barley variety controls the proteomic response to short periods of heat stress - Catherine Lawn
• Gelatin-coated indium tin oxide slides improve human cartilage-bone tissue adherence and N-glycan signal intensity for mass spectrometry imaging - Yea Rin Olivia Lee
• Web-based phosphoproteomics data analysis with Phosphomatics - Michael Leeming
• Combining the data-driven and hypothesis-driven approaches in one go via a novel intelligent data acquisition Hybrid-DIA mass spectrometry strategy   - Bruno Madio
• Routine single-shot identification of >9K proteins and >100K peptides with the next-generation low-flow UHPLC coupled to HRAM MS - Bruno Madio
• Robust public computational services supporting proteomics for Australian researchers - Johan Gustafsson

• Phosphomatics: Web based interactive analysis of phosphoproteomic data - Nicholas Williamson
• Haplodome: a web-based knowledgebase and toolkit for searching, visualising and analysing mass spectrometry immunopeptidomics data - Katherine E Scull
• Proteome-wide estimation of the change in protein stability due to missense mutation - Dan Andrews
• DIA-seq: A novel isoform-level multi-omics data analysis pipeline identifies brain-specific changes in mouse model of behaviour - Manika Singh
• The future of DIA proteomics - Vadim Demichev

SoAPS - Network with fellow students and invited speakers during a fun evening of competitive lawn bowls and refreshments.

For all other delegates, this evening has been kept deliberately free as an opportunity to network with your fellow colleagues and industry partners, as well as to explore and enjoy Lorne’s scenery, bars and restaurants.